Adaptive Roles of CRISPR-Cas Systems in Prokaryotic Immunity and Genome Editing: A Narrative Review
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Abstract
CRISPR-Cas systems have emerged as one of the most transformative genome-editing technologies due to their ability to provide precise, programmable, and efficient manipulation of genetic information. Originally identified as adaptive immune systems in bacteria and archaea, CRISPR-Cas mechanisms enable microorganisms to recognise and eliminate invading genetic materials through coordinated interactions between CRISPR RNA (crRNA) and Cas proteins. This narrative review examines the molecular mechanisms of CRISPR-Cas adaptive immunity in prokaryotes, the classification and functions of major Cas proteins, and their repurposing for genome editing applications. A literature search was conducted in PubMed, Web of Science, Google Scholar and Scopus using the keywords “CRISPR”, “Cas9”, “adaptive immunity”, “genome editing”, “gene therapy” and “off-target effects” combined with Boolean operators (AND and OR). Articles included were publications between 2016 to 2026. The findings show that CRISPR-Cas adaptive immunity involves three major stages: adaptation, CRISPR RNA processing, and interference, where Cas proteins such as Cas9, Cas12, and Cas13 mediate targeted nucleic acid recognition and cleavage. Repurposed CRISPR systems have enabled advances in genome editing, gene therapy, infectious disease diagnostics, cancer research, and agricultural biotechnology. However, challenges including off-target effects, immune responses, delivery limitations, and ethical concerns surrounding human genome modification remain significant barriers. CRISPR-Cas technology represents a powerful precision-engineering platform requiring improved specificity, safety mechanisms, and ethical regulatory frameworks to maximize its therapeutic and scientific potential.
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References
Adli, M. (2018). The CRISPR tool kit for genome editing and beyond. Nature Communications, 9, 1911. https://doi.org/10.1038/s41467-018-04252-2
Ahmed, M. I., Asghar, M., Javed, F., Abbas, W., & Ahmed, T. (2026). CRISPR-Cas9 gene therapy for hemoglobinopathies: Clinical outcomes and future directions. Gene Therapy, 33(1), 15-28. https://doi.org/10.1038/s41434-025-00652-0
Ansori, A. N. M., Susilo, R. J. K., & Fadholly, A. (2023). CRISPR-based diagnostics for infectious diseases: A systematic review. Infectious Disease Reports, 15(3), 234-249. https://doi.org/10.3390/idr15030025
Asmamaw, M., & Zawdie, B. (2021). Mechanism and applications of CRISPR/Cas-9-mediated genome editing. Biologics: Targets and Therapy, 15, 353–361. https://doi.org/10.2147/BTT.S326422
Baerwald, M. R., Goodbla, A. M., & Schreier, A. D. (2020). Field-deployable CRISPR-Cas diagnostics for environmental monitoring. Molecular Ecology Resources, 20 (4), 876-887. https://doi.org/10.1111/1755-0998.13148
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D. A., & Horvath, P. (2007). CRISPR provides acquired resistance against viruses in prokaryotes. Science, 315(5819), 1709–1712. https://doi.org/10.1126/science.1138140
Bauer, R., Haider, D., Grempels, A., Roscher, R., Mauerer, S., & Spellerberg, B. (2023). Diversity of CRISPR-Cas type II-A systems in Streptococcus anginosus. Frontiers in Microbiology, 14, 1226893. https://doi.org/10.3389/fmicb.2023.1226893
Behler, J., Sharma, K., Reimann, V., Wilde, A., & Hess, W. R. (2020). Approaches to study CRISPR RNA biogenesis and the key players involved. Methods, 172, 12–26. https://doi.org/10.1016/j.ymeth.2019.05.008
Bendixen, L., Jensen, T. I., & Bak, R. O. (2023). CRISPR-Cas-mediated transcriptional modulation: The therapeutic promises of CRISPRa and CRISPRi. Molecular Therapy, 31(7), 1920–1937. https://doi.org/10.1016/j.ymthe.2023.04.017
Bhatia, S., & Yadav, S. K. (2023). CRISPR-Cas for genome editing: Classification, mechanism, designing and applications. International Journal of Biological Macromolecules, 253, 127278. https://doi.org/10.1016/j.ijbiomac.2023.127278
Butt, H., Eid, A., Ali, Z., Atia, M. A. M., Mokhtar, M. M., Hassan, N., Lee, C. M., Bao, G., & Mahfouz, M. M. (2017). Efficient CRISPR/Cas9-mediated genome editing using a chimeric single-guide RNA molecule. Frontiers in Plant Science, 8, 1441. https://doi.org/10.3389/fpls.2017.01441
Cetin, B., Erendor, F., Eksi, Y. E., Sanlioglu, A. D., & Sanlioglu, S. (2025). Advancing CRISPR genome editing into gene therapy clinical trials: Progress and future prospects. Expert Review of Molecular Medicine. https://doi.org/10.1017/erm.2025.6
Chehelgerdi, M., Chehelgerdi, M., Khorramian-Ghahfarokhi, M., Shafieizadeh, M., Mahmoudi, E., Eskandari, F., Rashidi, M., Arshi, A., & Mokhtari-Farsani, A. (2024). Comprehensive review of CRISPR-based gene editing: Mechanisms, challenges, and applications in cancer therapy. Molecular Cancer, 23, Article 19. https://doi.org/10.1186/s12943-024-02013-6
Chen, J.-X., Hu, Y.-T., Zhang, C.-C., Luo, M.-S., & Zhang, W.-Q. (2024). sgRNA structure optimization and PTG/Cas9 system synergistically boost gene knockout efficiency in an insect. International Journal of Biological Macromolecules, 270, 132520. https://doi.org/10.1016/j.ijbiomac.2024.132520
Chen, L., Zhang, S., Xue, N., Hong, M., Zhang, X., Zhang, D., Yang, J., Bai, S., Huang, Y., Meng, H., Wu, H., Luan, C., Zhu, B., Ru, G., Gao, H., Zhong, L., Liu, M., Liu, M., Cheng, Y., ... Li, D. (2023a). Engineering a precise adenine base editor with minimal bystander editing. Nature Chemical Biology, 19, 96–105. https://doi.org/10.1038/s41589-022-01227-5
Chen, P. J., & Liu, D. R. (2023b). Prime editing for precise and highly versatile genome manipulation. Nature Reviews Genetics, 24(3), 161–177. https://doi.org/10.1038/s41576-022-00541-y
Clark, T., Waller, M. A., Loo, L., Moreno, C. L., Denes, C. E., & Neely, G. G. (2024). CRISPR activation screens: Navigating technologies and applications. Trends in Biotechnology, 42(8), 1017–1034. https://doi.org/10.1016/j.tibtech.2024.01.004
Coller, B. S. (2019). Ethics of human genome editing. Annual Review of Medicine, 70, 289–305. https://doi.org/10.1146/annurev-med-112717-094629
Cui, N., Zhang, J.-T., Liu, Y., Liu, Y., Liu, X.-Y., Wang, C., Huang, H., & Jia, N. (2023).Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment. Molecular Cell, 83(20), 3692–3707.e8. https://doi.org/10.1016/j.molcel.2023.08.021
Cunningham, C. H., Hennelly, S. C., & O'Connell, M. R. (2021). SHERLOCK-based detection of SARS-CoV-2 and other viral pathogens. Nature Protocols, 16(5), 2455-2475. https://doi.org/10.1038/s41596-020-00410-8
Ding, X., Yu, L., Chen, L., Li, Y., Zhang, J., Sheng, H., Ren, Z., Li, Y., Yu, X., Jin, S., & Cao, J. (2022). Recent progress and future prospect of CRISPR/Cas-derived transcription activation (CRISPRa) system in plants. Cells, 11(19), 3045. https://doi.org/10.3390/cells11193045
Dong, W., & Kantor, B. (2021). Lentiviral vectors for delivery of gene-editing systems based on CRISPR/Cas: Current state and perspectives. Viruses, 13(7), 1288. https://doi.org/10.3390/v13071288
Du, Y., et al. (2023). CRISPR/Cas9 systems: Delivery technologies and biomedical applications. Asian Journal of Pharmaceutical Sciences, 18(6), 100879. https://doi.org/10.1016/j.ajps.2023.100879
Eş, I., Gavahian, M., & Mousavi Khaneghah, A. (2019). CRISPR-Cas applications in agricultural biotechnology: Current status and future prospects. Critical Reviews in Food Science and Nutrition, 59(13), 2039-2050. https://doi.org/10.1080/10408398.2018.1439876
Farzanehpour, M., Miri, A., Ghorbani Alvanegh, A., & Esmaeili Gouvarchinghaleh, H. (2023). Viral vectors, exosomes, and vexosomes: Potential armamentarium for delivering CRISPR/Cas to cancer cells. Biochemical Pharmacology, 212, 115571. https://doi.org/10.1016/j.bcp.2023.115571
Gehrke, F., Schindele, A., & Puchta, H. (2022). Nonhomologous end joining as key to CRISPR/Cas-mediated plant chromosome engineering. Plant Physiology, 188(2), 736–750. https://doi.org/10.1093/plphys/kiab529
Ghavami, S., Mirzaei, H., & Sahebkar, A. (2021). CRISPR interference and its applications. In Progress in Molecular Biology and Translational Science (Vol. 178, pp. 81–107). Elsevier. https://doi.org/10.1016/bs.pmbts.2020.12.003
González-Ávila, L. U., Vega-López, J. M., Pelcastre-Rodríguez, L. I., Cabrero-Martínez, O. A., Hernández-Cortez, C., & Castro-Escarpulli, G. (2021). The challenge of CRISPR-Cas toward bioethics. Frontiers in Microbiology, 12, 697798. https://doi.org/10.3389/fmicb.2021.697798
Gootenberg, J. S., Abudayyeh, O. O., Lee, J. W., Essletzbichler, P., Dy, A. J., Joung, J., et al. (2017). Nucleic acid detection with CRISPR-Cas13a/C2c2. Science, 356(6336), 438–442. https://doi.org/10.1126/science.aam9321
Gostimskaya, I. (2022). CRISPR-Cas9: A history of its discovery and ethical considerations of its use in genome editing. Biochemistry (Moscow), 87(8), 777–788. https://doi.org/10.1134/S0006297922080090
Gronowski, A. M. (2018). CRISPR-Cas diagnostics: A new era in molecular testing. Clinical Chemistry, 64(10), 1412-1415. https://doi.org/10.1373/clinchem.2018.290601
Guo, C., Ma, X., Gao, F., & Guo, Y. (2023). Off-target effects in CRISPR/Cas9 gene editing. Frontiers in Bioengineering and Biotechnology, 11, 1143157. https://doi.org/10.3389/fbioe.2023.1143157
Harsij, Z., Ghafoorzadeh, Z., & Goharian, E. (2024). The CRISPR revolution: Unraveling the mysteries of life's genetic code. Gene, 915, 148537. https://doi.org/10.1016/j.gene.2024.148537
Hu, J. H., Miller, S. M., Geurts, M. H., Tang, W., Chen, L., Sun, N., Zeina, C. M., Gao, X., Rees, H. A., Lin, Z., & Liu, D. R. (2018). Evolved Cas9 variants with broad PAM compatibility and high DNA specificity. Nature, 556(7699), 57–63. https://doi.org/10.1038/nature26155
Jin, S., Zhu, Z., Li, Y., Zhang, S., Liu, Y., Li, D., Li, Y., Luo, Y., Cheng, Z., Zhao, K. T., Gao, Q., Yang, G., Li, H., Liang, R., Zhang, R., Qiu, J.-L., Zhang, Y. E., Liu, J.-J. G., ... Gao, C. (2025). Functional RNA splitting drove the evolutionary emergence of type V CRISPR-Cas systems from transposons. Cell, 188(3), 698–715.e23. https://doi.org/10.1016/j.cell.2024.12.018
Kantor, A., McClements, M. E., & MacLaren, R. E. (2020). CRISPR-Cas9 DNA base-editing and prime-editing. International Journal of Molecular Sciences, 21(17), 6240. https://doi.org/10.3390/ijms21176240
Karvelis, T., Bigelytė, G., Young, J. K., Hou, Z., Zedaveinytė, R., Budrė, K., Paulraj, S., Djukanovic, V., Gasior, S., Šilanskas, A., Venclovas, Č., & Siksnys, V. (2020). PAM recognition by miniature CRISPR-Cas12f nucleases triggers programmable double-stranded DNA target cleavage. Nucleic Acids Research, 48(9), 5016–5023. https://doi.org/10.1093/nar/gkaa208
Kass, E. M., Helgadottir, H. R., Chen, C.-C., Barbera, M., Wang, R., Westermark, U. K., Ludwig, T., Moynahan, M. E., & Jasin, M. (2013). Double-strand break repair by homologous recombination in primary mouse somatic cells requires BRCA1 but not the ATM kinase. Proceedings of the National Academy of Sciences, 110(14), 5564–5569. https://doi.org/10.1073/pnas.1216824110
Kazemian, P., Yu, S.-Y., Thomson, S. B., Birkenshaw, A., Leavitt, B. R., & Ross, C. J. D. (2022). Lipid-nanoparticle-based delivery of CRISPR/Cas9 genome-editing components. Molecular Pharmaceutics, 19(5), 1669–1686. https://doi.org/10.1021/acs.molpharmaceut.1c00883
Koonin, E. V., Makarova, K. S., & Zhang, F. (2019). Origins and evolution of CRISPR-Cas systems. Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1772), 20180087. https://doi.org/10.1098/rstb.2018.0087
Kraus, C., & Sontheimer, E. J. (2023). Applications of anti-CRISPR proteins in genome editing and biotechnology. Journal of Molecular Biology, 435(20), 168190. https://doi.org/10.1016/j.jmb.2023.168190
Labude, M. K., Xafis, V., Lai, P. S., & Mills, C. (2022).. Vulnerability and the ethics of human germline genome editing. The CRISPR Journal, 5(3), 387–394. https://doi.org/10.1089/crispr.2021.0129
Laurent, M., Geoffroy, M., Pavani, G., & Guiraud, S. (2024). CRISPR-based gene therapies: From preclinical to clinical treatments. Cells, 13(5), 415. https://doi.org/10.3390/cells13050415
Liang, R., He, Z., Zhao, K. T., Zhu, H., Hu, J., Liu, G., Gao, Q., Liu, M., Zhang, R., Qiu, J.-L., & Gao, C. (2024). Prime editing using CRISPR-Cas12a and circular RNAs in human cells. Nature Biotechnology, 42(12), 1867–1875. https://doi.org/10.1038/s41587-024-02247-2
Liang, Y., Tong, S., Zhang, J., Tan, G.-Y., Zhang, L., Lee, S. Y., & Tong, Y. (2025). Expanding horizons of CRISPR applications beyond genome editing. Trends in Genetics. https://doi.org/10.1016/j.tig.2025.03.001
López de Alba, E., Salguero, I., Giménez-Llorente, D., Montes-Torres, J., Fernández-Sanromán, Á., Casajús-Pelegay, E., Terrón-Bautista, J., Barroso-González, J., Macintyre, G., Fernández-Leiro, R., Losada, A., & Cortés-Ledesma, F. (2025). A comprehensive genetic catalog of human double-strand break repair. Science, 388(6748), eadr8955. https://doi.org/10.1126/science.adr8955
Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2025). An updated evolutionary classification of CRISPR-Cas systems including rare variants. Nature Microbiology. Advance online publication. https://doi.org/10.1038/s41564-025-02066-3
Makarova, K. S., Wolf, Y. I., Iranzo, J., Shmakov, S. A., Alkhnbashi, O. S., Brouns, S. J. J., Charpentier, E., Cheng, D., Haft, D. H., Horvath, P., Moineau, S., Mojica, F. J. M., Scott, D., Shah, S. A., Siksnys, V., Terns, M. P., Venclovas, Č., White, M. F., Yakunin, A. F., ... Koonin, E. V. (2020). Evolutionary classification of CRISPR-Cas systems: A burst of class 2 and derived variants. Nature Reviews Microbiology, 18(2), 67–83. https://doi.org/10.1038/s41579-019-0299-x
Malone, L. M., Warring, S. L., & Jackson, S. A. (2021). Conquering CRISPR: How phages overcome bacterial adaptive immunity. Current Opinion in Biotechnology, 68, 30–36. https://doi.org/10.1016/j.copbio.2020.08.003
Manning, B. J., Zhang, F., & Gootenberg, J. S. (2022). High-throughput SHERLOCK for COVID-19 testing. Journal of Clinical Microbiology, 60(3), e01356-21. https://doi.org/10.1128/jcm.01356-21
Matharu, N., Rattanasopha, S., Tamura, S., Maliskova, L., Wang, Y., Bernard, A., Hardin, A., Eckalbar, W. L., Vaisse, C., & Ahituv, N. (2019). CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency. Science, 363(6424), eaau0629. https://doi.org/10.1126/science.aau0629
Mikulic, M. (2025, December 17). CRISPR genome editing – Statistics & facts. Statista. https://www.statista.com/topics/7803/crispr-genome-editing/
Mitić, D., Ivančić-Baće, I., & Bolt, E. L. (2023). CRISPR-Cas adaptation in Escherichia coli. Bioscience Reports, 43(3), BSR20222014. https://doi.org/10.1042/BSR20222014
Mohammadian Farsani, A., et al. (2024). Lipid nanoparticles: The game-changer in CRISPR-Cas9 genome editing. Heliyon, 10, e25133. https://doi.org/10.1016/j.heliyon.2024.e25133
Morelli, E., Gullà, A., Amodio, N., Taiana, E., Neri, A., Fulciniti, M., & Munshi, N. C. (2021). CRISPR interference (CRISPRi) and CRISPR activation (CRISPRa) to explore the oncogenic lncRNA network. In Long Non-Coding RNAs in Cancer (pp. 189–204). https://doi.org/10.1007/978-1-0716-1004-2_12
Neugebauer, M. E., Hsu, A., Arbab, M., Krasnow, N. A., McElroy, A. N., Pandey, S., Doman, J. L., Huang, T. P., Raguram, A., Banskota, S., Newby, G. A., Tolar, J., Osborn, M. J., & Liu, D. R. (2023). Evolution of an adenine base editor into a small, efficient cytosine base editor with low off-target activity. Nature Biotechnology, 41, 1043–1052. https://doi.org/10.1038/s41587-022-01544-8
Nguyen, G. T., Schelling, M. A., Raju, A., Buscher, K. A., Sritharan, A., & Sashital, D. G. (2024). Cas12a exhibits metal-dependent specificity switching. Nucleic Acids Research, 52(13), 7462–7478. https://doi.org/10.1093/nar/gkae427
Ortiz-Bueno, M., Zinghirino, F., Puig Serra, P., Paschoudi, K., Montoliu, L., Atilla, E., Luo, Y., Cavazza, A., Lederer, C. W., & Benabdellah, K. (2026). From bench to bedside: Ethical and clinical best practices for genome editing applications. International Journal of Molecular Sciences, 27. https://doi.org/10.3390/ijms27010001
Park, S. H., Lee, C. M., & Bao, G. (2021). CRISPR-Cas9 for sickle cell disease and β-thalassemia: Clinical advances and challenges. Molecular Therapy, 29(6), 1911-1923. https://doi.org/10.1016/j.ymthe.2021.03.001
Perčulija, V., O'Connell, M. R., & East-Seletsky, A. (2021). Functional features and current applications of the RNA-targeting type VI CRISPR-Cas systems. Advanced Science, 8(24), 2101734. https://doi.org/10.1002/advs.202101734
Pinaud, M., & Zamborlini, A. (2025). Electroporation-based CRISPR-Cas9-mediated gene knockout in THP-1 cells and single-cell clone isolation. Journal of Visualized Experiments. https://doi.org/10.3791/68673
Poddar, A., Sharma, V., & Singh, S. (2024). CRISPR-based therapeutic strategies for inherited disorders: From bench to bedside. Journal of Translational Medicine, 22(1), 305. https://doi.org/10.1186/s12967-024-05098-8
Raitskin, O., Schudoma, C., West, A., & Patron, N. J. (2019). Comparison of efficiency and specificity of CRISPR-associated (Cas) nucleases in plants: An expanded toolkit for precision genome engineering. PLoS ONE, 14(2), e0211598. https://doi.org/10.1371/journal.pone.0211598
Ramalingam, S., Jeevanandham, R., & Kuppusamy, R. (2019). CRISPR-based point-of-care diagnostics for infectious diseases. Biosensors and Bioelectronics, 137, 145-155. https://doi.org/10.1016/j.bios.2019.05.004
Rueda, J., Segers, S., Hopster, J., Kudlek, K., Liedo, B., Marchiori, S., & Danaher, J. (2025). Anticipatory gaps challenge the public governance of heritable human genome editing. Journal of Medical Ethics. https://doi.org/10.1136/jme-2024-110705
Schmidt, R., Steinhart, Z., Layeghi, M., Freimer, J. W., Bueno, R., Nguyen, V. Q., Blaeschke, F., Ye, C. J., & Marson, A. (2022). CRISPR activation and interference screens decode stimulation responses in primary human T cells. Science, 375(6580), eabj4008. https://doi.org/10.1126/science.abj4008
Sharma, G., Sharma, A. R., Bhattacharya, M., Lee, S.-S., & Chakraborty, C. (2021). CRISPR-Cas9: A preclinical and clinical perspective for the treatment of human diseases. Molecular Therapy, 29(2), 571–586. https://doi.org/10.1016/j.ymthe.2020.12.006
Shin, J., Jiang, F., Liu, J. J., Bray, N. L., Rauch, B. J., Baik, S. H., Nogales, E., Bondy-Denomy, J., Corn, J. E., & Doudna, J. A. (2020). Development of CRISPR/Cas9 system for targeted DNA modifications and recent improvements in modification efficiency and specificity. BMB Reports, 53(6), 273–283. https://doi.org/10.5483/BMBRep.2020.53.6.084
Silverstein, R. A., Kim, N., Kroell, A.-S., Walton, R. T., Delano, J., Butcher, R. M., Pacesa, M., Smith, B. K., Christie, K. A., Ha, L. L., Meis, R. J., Clark, A. B., Spinner, A. D., Lazzarotto, C. R., Li, Y., Matsubara, A., Urbina, E. O., Dahl, G. A., ... Kleinstiver, B. P. (2025). Custom CRISPR-Cas9 PAM variants via scalable engineering and machine learning. Nature. Advance online publication. https://doi.org/10.1038/s41586-025-09177-2
Snuzik, A. (2024). Assessing CRISPR/Cas9 potential in SDG3 attainment: Malaria elimination—Regulatory and community engagement landscape. Malaria Journal, 23, 52. https://doi.org/10.1186/s12936-024-04864-5
Stella, G., Niewoehner, O., & White, M. F. (2024). Type III CRISPR-Cas: Beyond the Cas10 effector complex. Trends in Biochemical Sciences, 49(1), 34–49. https://doi.org/10.1016/j.tibs.2023.09.007
Sun, D. (2021). Design of time-delayed safety switches for CRISPR gene therapy. Scientific Reports, 11, 21651. https://doi.org/10.1038/s41598-021-01133-z
Sun, W., Liu, H., Yin, W., Qiao, J., Zhao, X., & Liu, Y. (2022). Strategies for enhancing the homology-directed repair efficiency of CRISPR-Cas systems. The CRISPR Journal, 5(1), 18–32. https://doi.org/10.1089/crispr.2021.0049
Tuncel, A., Pan, C., Clem, J. S., Liu, D., & Qi, Y. (2025). CRISPR-Cas applications in agriculture and plant research. Nature Reviews Molecular Cell Biology, 26(6), 419–441. https://doi.org/10.1038/s41580-024-00792-2
Vicencio, J., Sánchez-Bolaños, C., Moreno-Sánchez, I., Brena, D., Vejnar, C. E., Kukhtar, D., Ruiz-López, M., Cots-Ponjoan, M., Rubio, A., Rodrigo Melero, N., Crespo-Cuadrado, J., Carolis, C., Pérez-Pulido, A. J., Giráldez, A. J., Kleinstiver, B. P., Cerón, J., & Moreno-Mateos, M. A. (2022). Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes. Nature Communications, 13, 2601. https://doi.org/10.1038/s41467-022-30307-9
Villiger, L., Joung, J., Koblan, L., Weissman, J., Abudayyeh, O. O., & Gootenberg, J. S. (2024). CRISPR technologies for genome, epigenome and transcriptome editing. Nature Reviews Molecular Cell Biology, 25, 393–415. https://doi.org/10.1038/s41580-024-00687-3
Volodina, K., Ivanov, R., & Smirnov, A. (2025). Delivery strategies for CRISPR-Cas genome editing: Current state and future directions. Advanced Drug Delivery Reviews, 205, 115-129. https://doi.org/10.1016/j.addr.2025.115129
Wei, A., Yin, D., Zhai, Z., Ling, S., Le, H., Tian, L., Xu, J., Paludan, S. R., Cai, Y., & Hong, J. (2023). In vivo CRISPR gene editing in patients with herpetic stromal keratitis. Molecular Therapy, 31(10), 2946–2958. https://doi.org/10.1016/j.ymthe.2023.08.020
Widney, K. A., Yang, D.-D., Rusch, L. M., & Copley, S. D. (2024). CRISPR-Cas9-assisted genome editing in Escherichia coli elevates the frequency of unintended mutations. bioRxiv. https://doi.org/10.1101/2024.03.14.584993
Wu, H., Sun, Y., Wang, Y., Luo, L., & Song, Y. (2024). Advances in miniature CRISPR-Cas proteins and their applications in gene editing. Archives of Microbiology, 206, 191. https://doi.org/10.1007/s00203-024-03992-9
Yang, H., Ren, S., Yu, S., Pan, H., Li, T., Ge, S., Zhang, J., & Xia, N. (2020). Methods favoring homology-directed repair choice in response to CRISPR/Cas9-induced double-strand breaks. International Journal of Molecular Sciences, 21(18), 6461. https://doi.org/10.3390/ijms21186461
Yu, W., Lescale, C., Babin, L., Bedora-Faure, M., Lenden-Hasse, H., Baron, L., Demangel, C., Yelamos, J., Brunet, E., & Deriano, L. (2020). Repair of G1-induced DNA double-strand breaks in S–G2/M by alternative NHEJ. Nature Communications, 11, 5239. https://doi.org/10.1038/s41467-020-19008-1
Zhang, F., Cong, L., & Ran, F. A. (2016). Engineering of CRISPR-Cas9 for expanded PAM compatibility. Nature, 556(7699), 57-63. https://doi.org/10.1038/nature26155
Zhang, X., Ma, D., & Liu, F. (2025). CRISPR technology and its emerging applications. Genomics, Proteomics & Bioinformatics. https://doi.org/10.1093/gpbjnl/qzaf021
Zhao, Z., Shang, P., Mohanraju, P., & Geijsen, N. (2023). Prime editing: Advances and therapeutic applications. Trends in Biotechnology, 41(8), 1000–1012. https://doi.org/10.1016/j.tibtech.2023.01.006
Zhou, X., Diao, R., Li, X., Ziegler, C. A., Gramelspacher, M. J., Freddolino, L., Hou, Z., & Zhang, Y. (2025). Cas9 senses CRISPR RNA abundance to regulate CRISPR spacer acquisition. Nature. Advance online publication. https://doi.org/10.1038/s41586-025-09253-7